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ID 10584
Eprint ID
10584
FullText URL
Title Alternative
Cloning and Nucleotide Sequenceof the Genes Encoding Restriction-Modification System from Acidophilic Bacterium Acidocella facilis 22M
Author
Yamaoka, Seiji
Takenobu, Hisanori
Kojo, Toshiyuki
Tanaka, Hidehiko
Abstract
The gene encoding the Afa22MI restriction-modification system recognizing the sequence 5'-CGATCG-3' was cloned from Acidocella facilis 22M and sequenced. The cloned DNA fragment contained three genes encoding the Afa22MI methylase (M.Afa22MI) , the putative restriction endonuclease Afa22MI (R.Afa22MI) and a very short patch repair endonuclease (Afa22MI vsr) . M. Afa22MI gene has the conserved motifs of C5-cytosine methyltransferase. Afa22MI vsr gene was localized upstream of M. Afa22MI gene in opposite orientation, and an open reading frame of R. Afa22MI has about 53% sequence similarity to the amino acid sequence for the variable region of M.XorⅡ. Afa22MI vsr has about 66% sequence similarity to the amino acid sequence of XorII vsr which was associated M. XorII.
Abstract Alternative
CGATCGを認識する Afa22MI 制限修飾系遺伝子を好酸性細菌 Acidocella facilis 22M より、クローニングし、塩基配列を決定した。その結果、C5-シトシンメチラーゼに特徴的なモチーフが保存された。M.Afa22MI 遺伝子、その上流に、M.Afa22MI 遺伝子とは逆方向に、 very short patch repair endonuclease 様タンパク質遺伝子(Afa22MI vsr)、制限酵素(R.Afa22MI)遺伝子と推定されるオープンリーディングフレームが見出された。M.Afa22MI の推定アミノ酸配列は、Xanthomonas oryzae pv. oryzae 由来 M.XorII の配列と全体で約63%、veriable region 内で約53%の高い配列類似性を示した。また、Afa22MI usr の推定アミノ酸配列も、M.XorIIに付随する XorII vsr の配列と約66%の高い類似性を示した。
Keywords
restriction-modification system
restriction endonuclease
C5-cytosine methyltransferase
very short patch repair endonuclease
Published Date
2003-02
Publication Title
岡山大学農学部学術報告
Publication Title Alternative
Scientific reports of the Faculty of Agriculture, Okayama University
Volume
volume92
Issue
issue1
Publisher
岡山大学農学部
Publisher Alternative
Faculty of Agriculture,Okayama University
Start Page
9
End Page
15
ISSN
0474-0254
NCID
AN00033029
Content Type
Departmental Bulletin Paper
language
日本語
File Version
publisher
Refereed
False
Eprints Journal Name
srfa